| DAY 1 | Genome Assembly |
| 08:00 – 08:30 | Welcome and Housekeeping | — | Frances Nikki Borja |
| 08:30 – 09:15 | Introduction to Galaxy Analyses | Galaxy platform overview | Riza May Pasco |
| 09:15 – 09:30 | Break |
| 09:30 – 10:45 | Introduction to Genome Assembly | Assembly concepts and strategies | Ramil Mauleon |
| 10:45 – 12:00 | Hands-on 1: Short Reads Assembly | GTN: General Introduction to Assembly | Frances Nikki Borja |
| 12:00 – 13:00 | Lunch Break |
| 13:00 – 15:00 | Hands-on 2: Long Reads Assembly Part 1 | Genome assembly using PacBio data | Riza May Pasco |
| 15:00 – 15:15 | Break |
| 15:15 – 16:45 | Hands-on 3: Long Reads Assembly Part 2 | Continued long-read assembly | — |
| 16:45 – 17:00 | Day 1 Recap | — | — |
| DAY 2 | Genome Annotation |
| 08:00 – 08:30 | Review and Assessment of Day 1 | — | — |
| 08:30 – 09:30 | Carry-over Assembly Topics + Introduction to Genome Annotation | Annotation concepts and workflow overview | Riza May Pasco / Frances Nikki Borja / Ramil Mauleon |
| 09:30 – 10:15 | Hands-on 1: Start Genome Annotation | GTN: Genome Annotation Tutorials | Jeffrey Detras |
| 10:15 – 10:30 | Break |
| 10:30 – 12:00 | Hands-on 2: Basic Genome Annotation | Gene structure annotation for sequences not at contig/scaffold level | — |
| 12:00 – 13:00 | Lunch Break |
| 13:00 – 15:00 | Hands-on 3: Annotation Using Pipelines | Galaxy annotation pipelines | — |
| 15:00 – 15:15 | Break |
| 15:15 – 16:00 | Hands-on 4: Visualization | Genome feature visualization using WebIGV | — |
| 16:00 – 17:00 | Planning Workshop + Wrap-up | Plan for 1k1 assembly and annotation; closing remarks | Ramil Mauleon |